I develop freely-available, open-source software packages in R/Bioconductor to analyze high-throughput genomics data. They are available through R cran, Bioconductor or GitHub.

developer

  • DSS Usage Stats
    (Dispersion Shrinakge for Sequencing): differential analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated regions (DMRs) from bisulfite sequencing (BS-seq) data. Available on Bioconductor.

  • InfiniumPurify
    R CRAN package for the estimation and adjustment for tumor purity in cancer methylation data analysis, available on R CRAN.

  • cfDNAmethy
    Reference-free and reference-based models for disease prediction by cell-free DNA methylation, available on GitHub.